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	<title>james-procter &amp;laquo; WordPress.com Tag Feed</title>
	<link>http://en.wordpress.com/tag/james-procter/</link>
	<description>Feed of posts on WordPress.com tagged "james-procter"</description>
	<pubDate>Thu, 20 Jun 2013 06:56:30 +0000</pubDate>

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<title><![CDATA[Research Methods]]></title>
<link>http://countryrap.wordpress.com/2013/03/03/new-methodologi/</link>
<pubDate>Sun, 03 Mar 2013 20:44:15 +0000</pubDate>
<dc:creator>Ellen Gillingham</dc:creator>
<guid>http://countryrap.wordpress.com/2013/03/03/new-methodologi/</guid>
<description><![CDATA[New methodologies and challenging ideas have spread through the arts and humanities. The study of li]]></description>
<content:encoded><![CDATA[<blockquote><p>New methodologies and challenging<br />
ideas have spread through the arts and humanities. The study of literature is no longer – if it ever was – simply the study and evaluation<br />
of poems, novels and plays. It is also the study of the ideas, issues<br />
and difﬁculties which arise in any literary text and in its interpretation. Other arts and humanities subjects have changed in analogous<br />
ways.<br />
With these changes, new problems have emerged. The ideas and<br />
issues behind these radical changes in the humanities are often<br />
presented without reference to wider contexts or as theories which<br />
you can simply ‘add on’ to the texts you read. Certainly, there’s<br />
nothing wrong with picking out selected ideas or using what comes<br />
to hand – indeed, some thinkers have argued that this is, in fact, all<br />
we can do. However, it is sometimes forgotten that each new idea<br />
comes from the pattern and development of somebody’s thought and<br />
it is important to study the range and context of their ideas. Against<br />
theories ‘ﬂoating in space’, the Routledge Critical Thinkers series places<br />
key thinkers and their ideas ﬁrmly back in their contexts.<br />
More than this, these books reﬂect the need to go back to the<br />
thinker’s own texts and ideas. Every interpretation of an idea, even<br />
the most seemingly innocent one, offers its own ‘spin’, implicitly or<br />
explicitly. To read only books on a thinker, rather than texts by that<br />
thinker, is to deny yourself a chance of making up your own mind.<br />
Sometimes what makes a signiﬁcant ﬁgure’s work hard to approach is<br />
not so much its style or content as the feeling of not knowing where<br />
to start. The purpose of these books is to give you ‘way in’ by offering<br />
an accessible overview of these thinkers’ ideas and works and by<br />
guiding your further reading, starting with each thinker’s own texts.</p></blockquote>
<p>Page viii SERIES EDITOR’S PREFACE</p>
<p>Stuart Hall by James Procter</p>
<p>2004</p>
<p><a href="http://www.polkfolk.com/docs/Ref-Library/Hall,%20Stuart/Stuart%20Hall%20-%20Routledge%20Critical%20Thinkers.pdf" rel="nofollow">http://www.polkfolk.com/docs/Ref-Library/Hall,%20Stuart/Stuart%20Hall%20-%20Routledge%20Critical%20Thinkers.pdf</a></p>
<p>An interesting explanation of research methodologies</p>
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<title><![CDATA[In Jesus]]></title>
<link>http://wordwisehymns.com/2012/03/21/in-jesus/</link>
<pubDate>Wed, 21 Mar 2012 07:15:01 +0000</pubDate>
<dc:creator>rcottrill</dc:creator>
<guid>http://wordwisehymns.com/2012/03/21/in-jesus/</guid>
<description><![CDATA[Words: James Proctor (dates unknown) Music: Robert Harkness (b. Mar. 2, 1880; d. May 8, 1961) Links:]]></description>
<content:encoded><![CDATA[<p><strong>Words:</strong> James Proctor (dates unknown)<br />
<strong>Music:</strong> Robert Harkness (b. Mar. 2, 1880; d. May 8, 1961)</p>
<p><strong>Links:</strong><br />
<a href="http://wordwisehymns.com/2010/03/23/today-in-1799-thomas-olivers-died/">Wordwise Hymns</a><br />
<a href="http://hymntime.com/tch/htm/i/n/j/in_Jesus.htm">The Cyber Hymnal</a></p>
<p>Note: We have little information about James Proctor, including the dates of his birth and death. (At a guess, I’d say about 1840 and 1900, respectively.) However, the story behind this gospel song is one of the most remarkable in the history of hymnody. You can check it out in the Wordwise Hymns link. The song was published in 1903. I’ve sung it as a solo many times, and in the 1950&#8242;s I had the privilege of meeting Robert Harkness, the composer of the tune.</p>
<p><span style="font-size:36px;line-height:36px;float:left;color:black;font-family:times;">I</span>t’s true. People try many different ways to find peace of mind and hope for the future. Some engage in good works and community service. Some focus on the acquisition of wealth and property. Some do all they can to be popular and win the praise of others. Some indulge in the proverbial wine, women and song. But for all this, there’s still something lacking. And Jim Proctor found he couldn’t make sense of life with the way he was living, and the belief system he’d espoused. There had to be something (and Someone) more.</p>
<p style="text-align:center;">CH-2) My soul is night, my heart is steel—<br />
I cannot see, I cannot feel;<br />
For light, for life, I must appeal<br />
In simple faith to Jesus.</p>
<p>The book of Ecclesiastes deals with this subject. It records a sermon preached by King Solomon in old age, looking back on his life (Ecc. 1:1). He had tried all of the things mentioned above, and more, but found them empty. The word “vanity” is found 28 times in the book, a word meaning a breath or a vapour. Pleasure, wealth, power, and so on, all seem as fragile and temporary as a mist that dissipates and vanishes away.</p>
<p>All of that relates to life “under the sun”–another expression Solomon uses often (27 times). It refers to this mortal life, from the womb to the tomb. If that’s all there is to life, then it is indeed vanity, a mere nothing. But after Solomon has clearly established that point, he describes another dimension of life that can give it meaning and purpose.</p>
<p>That is, that we cannot understand life without factoring in God and eternity. We are accountable to God for what we’ve done with our lives, and there is an eternal destiny beyond the grave to prepare for (Ecc. 12:13-14). The Lord Jesus dealt with this when He told His hearers to “lay up for yourselves treasures in heaven” (Matt. 6:19-21; cf. vs. 33), and Paul likewise sounded a similar note (Col. 3:1-4; cf. I Tim. 6:7).</p>
<p>After struggling for a long time on the wrong path, Mr. Proctor found that the Lord Jesus Christ, in His Person and work, made sense of a lot of things in his life that were otherwise dark and unknowable.</p>
<p style="text-align:center;">CH-3) He died, He lives, He reigns, He pleads;<br />
There’s love in all His words and deeds;<br />
There’s all a guilty sinner needs<br />
Forevermore in Jesus.</p>
<p>The men Proctor had associated with previously were agnostics and atheists. They’d no doubt think he’d lost his senses, if he left his association with them and trusted Christ as his Saviour. But he did it. And wrote:</p>
<p style="text-align:center;">CH-4) Though some should sneer, and some should blame,<br />
I’ll go with all my guilt and shame;<br />
I’ll go to Him because His name,<br />
Above all names, is Jesus.</p>
<p><strong>Questions:</strong><br />
1) A philosopher wrote that each person has “a God-shaped blank” in his soul. What does this mean?</p>
<p>2) What kinds of priorities and activities will enable the Christian to lay up treasures in heaven?</p>
<p><strong>Links:</strong><br />
<a href="http://wordwisehymns.com/2010/03/23/today-in-1799-thomas-olivers-died/">Wordwise Hymns</a><br />
<a href="http://hymntime.com/tch/htm/i/n/j/in_Jesus.htm">The Cyber Hymnal</a></p>
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<title><![CDATA[SWAT4LS: The Semantic Web in Scotland]]></title>
<link>http://duncan.hull.name/2008/12/02/swat4ls-the-semantic-web-in-scotland/</link>
<pubDate>Tue, 02 Dec 2008 11:57:49 +0000</pubDate>
<dc:creator>Duncan Hull</dc:creator>
<guid>http://duncan.hull.name/2008/12/02/swat4ls-the-semantic-web-in-scotland/</guid>
<description><![CDATA[Last Friday, the UK National e-Science Centre in Edinburgh hosted a workhop, Semantic Web Applicatio]]></description>
<content:encoded><![CDATA[<p><span style="border:medium none;float:right;margin-left:.5em;font-size:10px;font-weight:normal;color:#666666;"><a title="James Clerk Maxwell" href="http://www.flickr.com/photos/56701337@N00/3063553325/"><img src="http://farm4.static.flickr.com/3201/3063553325_88e61e3e56_m.jpg" alt="James Clerk Maxwell" /></a></span>Last Friday, the UK <a href="http://www.nesc.ac.uk/">National e-Science Centre in Edinburgh</a> hosted a workhop, <strong>S</strong>emantic <strong>W</strong>eb <strong>A</strong>pplications and <strong>T</strong>ools for the <strong>L</strong>ife <strong>S</strong>ciences (see <a href="http://www.swat4ls.org/">SWAT4LS.org</a> for the full details). Here are some incomplete and abbreviated notes from the workshop where there were some interesting people, paperware and software.</p>
<h3>People and Paperware</h3>
<ul>
<li><a href="http://nadiaanwar.blogspot.com/">Nadia Anwar</a> presented a paper on <em>Semantic Data Integration for Francisella tularensi Proteomic and Genomic Data</em>. This described experiences of developing a system for converting proteomics data in Excel to RDF, and what the benefits were.</li>
<li><a href="http://www.informatik.uni-trier.de/~ley/db/indices/a-tree/d/Dietze:Heiko.html">Heiko Dietze</a> presented a paper on <em>GoWeb: A semantic search engine for the life science web</em>. Have a look at <a href="http://www.gopubmed.org/goweb/search?q=hexokinase">GoWeb query for the hexokinase enzyme</a> for an example of the currently capability of GoWeb.</li>
<li><a href="http://www.cs.man.ac.uk/~sjupp/">Simon Jupp</a> presented a paper on <em>Knowledge Representation for Web Navigation </em>which described why the <a href="http://en.wikipedia.org/wiki/SKOS">Simple Knowledge Organisation System (SKOS)</a> is sometimes a more suitable language for modelling knowledge than OWL and RDF &#8211; see also <a href="http://alimanfoo.wordpress.com/2008/05/13/presentation-at-the-library-of-congress-simple-knowledge-organization-system-skos-in-the-context-of-semantic-web-deployment/">SKOS in the context of Semantic Web Deployment by Alistair Miles</a></li>
</ul>
<p>70 people registered to attend SWAT4LS in total, many familiar names and faces, plus some new people I&#8217;ve never met before:<!--more--></p>
<ul>
<li>Chemist <a href="http://www.linkedin.com/pub/a/348/539">James Procter</a>, University of Dundee, enlightened me about <a title="Distributed Annotation System" href="http://www.citeulike.org/user/dullhunk/tag/das">DAS</a> [1,2] &#8211; which has until now, been a bit of a Web service mystery to me. Sometimes it is <em>much</em> quicker to learn about something by asking an expert face-to-face, rather than reading the papers or playing with the software.</li>
<li>Chemist <a href="http://www.linkedin.com/in/nicoadams">Nico Adams</a>, University of Cambridge. Only got a chance to briefly say hello, but maybe we&#8217;ll get a chance to talk more next time&#8230; Nico has written some more comprehensive notes on the workshop <a href="http://wwmm.ch.cam.ac.uk/blogs/adams/?p=161">here</a> and <a href="http://wwmm.ch.cam.ac.uk/blogs/adams/?p=169">here</a>.</li>
<li>Christopher Baker, University of New Brunswick, one of the editors of the <a href="http://duncan.hull.name/2006/12/12/semantic-web-for-life-sciences-book/">semweb-lifesci-book</a>. On his way from Singapore to Canada (phew!)</li>
<li>Icelandic bioinformatician <a href="http://www.linkedin.com/in/mummi">Gudmundur Thorisson</a>, University of Leicester. Nice to meet you and talk about  genealogy in Iceland and <a href="http://friendfeed.com/e/a400993a-de92-917d-9ef3-0e482512ea52/Digital-Object-Identifiers-for-scientific/">DOI-goodness</a>&#8230; [3]</li>
</ul>
<h3>Software</h3>
<p>The workshop material had some adverts for <a href="http://www.publicationslist.org">publicationslist.org</a> and <a href="http://a.nnotate.com">a.nnotate.com</a> which are potentially interesting tools that might be worth investigating. Publications list looks like a <a href="http://duncan.hull.name/2008/10/31/defrosting-the-digital-library/">citeulike clone</a> with the emphasis on claiming publications as your own, then publishing them as a list. <a href="http://a.nnotate.com">A.nnotate.com</a> looks like a handy tool for annotating pdf (and other) files&#8230; probably worth a look.</p>
<p>SWAT4LS finished with an entertaining keynote by <a href="http://www.icapture.ubc.ca/who/who_mark_wilkinson.shtml">Mark Wilkinson</a> followed by a panel discussion hosted by <a href="http://homepages.cs.ncl.ac.uk/phillip.lord/">Phil Lord</a> titled: &#8220;<strong><span style="font-family:arial;">If the semantic web is so good, how come most people use OBO for ontologies and PERL for data integration</span>?</strong>&#8221; (Heh!) The simple answer was (by a fairly wide consensus) that the semantic web technology remains largely unproven. <a href="http://www.obofoundry.org/">OBO</a> is currently easier to use (!?) as well as having a larger number of more influential users (at least in the biomedical community). As Ben Good puts it (in a <a href="http://i9606.blogspot.com/2008/11/current-interest-levels-in-scientific.html">slightly different context</a>), this makes semantic web technology either:</p>
<ol>
<li>pitifully insignificant or</li>
<li>primed with the opportunity for dramatic growth&#8230;</li>
</ol>
<ul><span style="font-family:arial;"> </span></ul>
<p>We will probably have to wait a while longer to find out, maybe there is a third option? In the meantime, the SWAT4LS organisers (<a href="http://www.macs.hw.ac.uk/%7Eab/">Albert Burger</a>, <a href="http://www.biotec.tu-dresden.de/%7Eadrianp/index.htm">Adrian Paschke</a>, <a href="http://www.nettab.org/promano/">Paolo Romano</a> and <a href="http://www.sgtp.net/AndreaSplendiani/">Andrea Splendiani</a>) have published the workshop proceedings on <a href="http://ceur-ws.org/Vol-435">http://www.ceur-ws.org (volume 435)</a> with the best of these papers being published in a special issue by <a href="http://www.biomedcentral.com/bmcbioinformatics/">BMC Bioinformatics</a>.</p>
<h3>References</h3>
<ol>
<li>Andreas Prlic, Thomas Down, Eugene Kulesha, Robert Finn, Andreas Kahari and Tim Hubbard (2007). <a href="http://dx.doi.org/10.1186/1471-2105-8-333">Integrating sequence and structural biology with DAS</a>. BMC Bioinformatics  8 (1). doi:10.1186/1471-2105-8-333</li>
<li>Robin Dowell, Rodney Jokerst, Allen Day, Sean Eddy and Lincoln Stein (2001). <a href="http://dx.doi.org/10.1186/1471-2105-2-7">The distributed annotation system</a>. BMC Bioinformatics  2 (1). DOI:10.1186/1471-2105-2-7</li>
<li>Norman Paskin (2005). <a href="http://dx.doi.org/10.2481/dsj.4.12">Digital object identifiers for scientific data</a>. Data Science Journal  4, 12+. DOI:10.2481/dsj.4.12</li>
</ol>
<p>[Creative Commons licensed picture of a statue of the scottish scientist <a href="http://en.wikipedia.org/wiki/James_Clerk_Maxwell">James Clerk Maxwell</a> in Edinburgh taken by <a href="http://www.flickr.com/people/56701337@N00/">David Farrer</a>]</p>
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