Blogs about: Sequence Alignment

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Basic Local Alignment Search Tool

BLAST (short but very famous name) is one of the most popular tool in bioinformatics to find a local optimal alignment for a given sequence. In this post, we will briefly review the classical paper (A… more →

Online Disscussion Blog

Smith - Waterman và câu chuyện ma trận trọng số trong Sequence Alignment (phần 1)

Huy Q. Dinh wrote 1 week ago: Dân khoa học máy tính chuyển sang làm sinh tin chắc hẳn ai cũng biết thuật toán Smith-Waterman và sự … more →

Tags: Thuật toán/Dữ liệu, alignment scoring matrix, Dynamic Programming, Needleman-Wunsch, Smith-Waterman, substitution matrix

Basic Local Alignment Search Tool

Huy Q. Dinh wrote 8 months ago: BLAST (short but very famous name) is one of the most popular tool in bioinformatics to find a local … more →

Tags: BLAST

Strange paper I — 2 comments

Kay at Suicyte wrote 1 year ago: This week, I found two strange but interesting papers, one from the area of bioinformatics, the othe … more →

Tags: Science, bioinformatics, Evolution, substitution matrix, BLAST, BLOSUM62, Protein Evolution, Henikoff

Tracking changes in a multiple sequence alignment — 2 comments

Pawel Szczesny wrote 1 year ago: I had few free hours during this weekend so I’ve hacked together couple of scripts that in the … more →

Tags: visualization, Software, Research, bioinformatics, proteins, Video, protein families, Hack


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