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Freesurfer Resources




FreeSurfer Lecture #1: Overview of FreeSurfer and recon-all by Andrew Jahn (this video covers pretty much all of his introductory freesurfer videos into one long video) 19 more words


Doing Freesurfer in Steps with Recon-all Flags

Create Data Folder

  1. Connect to PC and pull over subjects T1 co file into: /usr/local/freesurfer/subjects
  2. Open terminal and go into subjects folder
    1. cd $SUBJECTS_DIR

Run Recon1… 907 more words


Anatomical Analysis- Recon 1

Recon 1

  1. Create folder in freesurfer subjects directory (usr/local/freesurfer/subjects) titled _DICOMS
    1. Can be done in the files program or using terminal (instructions bellow)
      1. cd $SUBJECTS_DIR…
  2. 346 more words

Open science is better science!

Repeat after me, open science is better science! 

I believe that, and in that spirit, I am starting to do my best to move the peer review process to open forums when possible (authors permitting of course). 182 more words

Freesurfer: Version

  • cat /usr/local/freesurfer/build-stamp.txt

CJ Hobgood In Fiji

CJ Hobgood former 2001 World Champion Surfer now currently retired and off tour, can still be found pushing the limits of surfing as a free surfer. 9 more words

Planet Blue Action Sports