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High resolution image rendering with VMD

Short but sweet!

In order to generate high resolution images of the systems that I have been working with for Publications or my PhD thesis I recently discovered Tachyon rendering from VMD… 60 more words

Atomic Structure

The Science Behind the Image Contest Winners: Light Trails of Receptor Tyrosine Kinase EphA2

The BPS Art of Science Image Contest took place again this year, during the 60th Annual Meeting in Los Angeles. The image that won second place was submitted by… 608 more words

Biophysics

Merge Structures in VMD

set mindist 1.6 ;set solute
set solvent
set combined molinfo $combined set {a b c alpha beta gamma}
set sel atomselect macro solute “index < [$sel num]”$sel delete… 48 more words

VMD

A tcl program to find the density of a system prepared for MD simulation, only cubic is considered

#!/usr/bin/tclsh
puts “Welcome! ”
puts “Here we find the density of a solvated system”
puts “How many types of molecules are there in the system” 104 more words

VMD

Finding out H3O+ ions and save as pdb file using vmd

# N.B. The process is however slow

mol new TRAJXYZ.xyz type xyz waitfor all
package require pbctools
pbc set {12.42 12.42 12.42} -all
animate goto 0… 129 more words

VMD

Find H3O+ ions using vmd

mol new movie.xyz type xyz waitfor all
package require pbctools
pbc set {12.42 12.42 12.42} -all
animate goto 0
set mol

set nf
set ox… 95 more words

VMD

Ralph Brinster, 'Father of Transgenesis'

Ralph Brinster, ‘Father of Transgenesis’

Larry H. Bernstein, MD, FCAP, Curator
Leaders in Pharmaceutical Innovation
Series E. 2; 7.7

A candid conversation with veterinarian Ralph Brinster, ‘Father of Transgenesis’ 5,252 more words

Genome Biology